Basic Information
VIS ID
TVIS30007909
Fusion event
HIV-PSMD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
231990109/231125395 (Hg38)
End
231990109/231125395 (Hg38)
Orient
-
Location type
Intronic
Target gene
PSMD1
miRNAs that regulate target gene
hsa-mir-24-3p ; hsa-mir-1180-3p ; hsa-mir-423-3p ; hsa-mir-346 ; hsa-mir-331-3p ; hsa-mir-149-5p ; hsa-mir-744-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-8057 ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-4284 ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3189-3p ; hsa-mir-212-5p
Nearest miRNA
hsa-mir-10b/Upstream/3653208; hsa-mir-1244-1/Downstream/237313;
Nearest TSS
ENST00000437798/Upstream/277; ENST00000467792/Downstream/28074;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/68137, chr2-CpG: 51/Downstream/73064
Upstream sequence
TCATTTTAGCTTCAGATAGTTTTGTTTGGGGTTAAGCCTGAGCTGTTTTTCACATTTGAGAAAAAATAAGATATAATCTAGCTATTTTAGAGGTTTCATT
Downstream sequence
CTTTGAAGATTCTGCCGTTTTAAAAGCCTATAGTGATTTCTACAGTTCTGATTTCTAGCAGTGAAACAAGATTCTTATCTAGCTTTTGTGCCTTTGCTGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate