Basic Information
VIS ID
TVIS30007911
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
232510160/231645449 (Hg38)
End
232510160/231645449 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/282656; hsa-mir-1244-1/Downstream/67865;
Nearest TSS
ENST00000437798/Upstream/52548; ENST00000440384/Downstream/61446;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/30235, chr2-CpG: 114/Downstream/16506
Nearby gene
RN7SL499P(+549) ;
Upstream sequence
ccgaagggctgggattacaggcctgagccactgcacccggcccctccctccctcctgtccttccttccGttttttttttgtggtgacagggtctcactat
Downstream sequence
gttgcccaggctggtctggaacaatcctctcgccttggcctcccaaaatgctgggattacaagtatgaccaccgcacccagcctgccaaatgattttgcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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