Basic Information
VIS ID
TVIS30007921
Fusion event
HIV-LOC101927896 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.2
Reference genome
GRCh37/hg19
Start
235789953/234881309 (Hg38)
End
235789953/234881309 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927896
Nearest miRNA
hsa-mir-10b/Upstream/2330736; hsa-mir-149/Downstream/2629622;
Nearest TSS
ENST00000437798/Upstream/198641; ENST00000484097/Downstream/70664;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/383412, chr2-CpG: 187/Downstream/70164
Nearby gene
SH3BP4(No orient, 70675)
Upstream sequence
CTGAAAGAGAAGCTTTCTGCAACCTTAGTTCTTTTTGCTCAGGAAGTACTAAAGTTAGAACCTGCTGTCTTTTAAAAAGAAATGATGTTATTTCACAGAT
Downstream sequence
CCGCACATTTAAATAACAAATAAGCCAAGACAAAACAAAACAAAATGTGAAGTCCTAAAATTTAGTTAAGATACATTTTTCTTCTAAGAGACTGCATGGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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