Basic Information
VIS ID
TVIS30007922
Fusion event
HIV-UBE2F-SCLY integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
238910630/238001988 (Hg38)
End
238910630/238001988 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA2J
Target gene
UBE2F-SCLY
Nearest miRNA
hsa-mir-10b/Upstream/491000; hsa-mir-149/Downstream/1066829;
Nearest TSS
ENST00000437798/Upstream/28893; ENST00000482096/Downstream/23273;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/34303, chr2-CpG: 117/Downstream/58405
Upstream sequence
TTTTGAAATTTTAATTTATAAAAACTCCCTGATACATGATAATAAACGTGCAGCTTACATTGAGTCATAAACGTTTAGTGGATTTATTTGCTATCCCCAT
Downstream sequence
CATGTTTGGTTTGTTTCAGAGCTTTGGAGCTTTAGGAGGAGAAGTTTCTGAATGTGTAATAAAGGAATATCCCAAttttttttttttttttttgagacag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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