Basic Information
VIS ID
TVIS30007923
Fusion event
HIV-UBE2F-SCLY integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
238988075/238079434 (Hg38)
End
238988075/238079434 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA2J
Target gene
UBE2F-SCLY
Nearest miRNA
hsa-mir-10b/Upstream/568446; hsa-mir-149/Downstream/989383;
Nearest TSS
ENST00000437798/Upstream/869; ENST00000440143/Downstream/2301;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/18063, chr2-CpG: 26/Downstream/20997
Upstream sequence
agtgcttacaggcatgagccagtgcacctggccaatttcatatcttttaaggaagctaagggaagaaagagcaagtatatgtttatagattttgcttgag
Downstream sequence
taatcttcttagttgccttttcacattatcttcatttgttccatggatctgaattatcatctggtgtcctttccttaatagacaattctgctccctccca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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