Basic Information
VIS ID
TVIS30007925
Fusion event
HIV-ASB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
239351928/238443287 (Hg38)
End
239351928/238443287 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2J
Target gene
ASB1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-93-5p ; hsa-mir-505-3p ; hsa-mir-10a-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-124-5p ; hsa-mir-1206 ; hsa-mir-3140-3p ; hsa-mir-4255 ; hsa-mir-6853-3p ; hsa-mir-6874-5p ; hsa-mir-7106-5p ; hsa-mir-4316 ; hsa-mir-765 ; hsa-mir-1827 ; hsa-mir-4779 ; hsa-mir-6864-5p ; hsa-mir-6126 ; hsa-mir-4493 ; hsa-mir-605-3p ; hsa-mir-4528 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p
Nearest miRNA
hsa-mir-10b/Upstream/932299; hsa-mir-149/Downstream/625530;
Nearest TSS
ENST00000437798/Upstream/8118; ENST00000481566/Downstream/3097;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/7301, chr2-CpG: 19/Downstream/9782
Upstream sequence
tctttccattctcttaggtctacttttgttgactttaagtagtagtttatcatttttgttatgcaaattttggacatttattattaagtttatgcttaga
Downstream sequence
tatgtcatagtaaaatttattttgctatcataaatggaattttcccttctactttttatatgaagcctattggtttgacaacctgctacttcaataagtt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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