Basic Information
VIS ID
TVIS30007926
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
239923986/239002290 (Hg38)
End
239923986/239002290 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2J
Nearest miRNA
hsa-mir-10b/Upstream/1491302; hsa-mir-149/Downstream/66527;
Nearest TSS
ENST00000437798/Upstream/76021; ENST00000428471/Downstream/64691;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/35077, chr2-CpG: 20/Downstream/6812
Nearby gene
HDAC4(No orient, 45878)
Upstream sequence
ATCTGTTTGCCTGAATTTGCTGAGGATTTTATTGCATTTGCTGGTTTCCTTTTTATTTCAATGAGCATCTTTTTAATTTTCAGGTTTACTAATTAGATAT
Downstream sequence
TTTCCATTTCCATCAGTTCTGATCCTTTTCATTTCTGCCAAGTTTTGTGTATAGCCAATTACTCTTTTTAGGCTATTTCTTGTCTTTCCTCTTTAAGATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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