VISDB Viral Integration Site DataBase

VIS ID

TVIS30007929

Fusion event

HIV-SEPTIN2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q37.3

Reference genome

Start

End

242257048/241317633 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-373-3p ; hsa-mir-124-3p ; hsa-mir-877-3p ; hsa-mir-744-5p ; hsa-mir-421 ; hsa-mir-652-3p ; hsa-mir-615-3p ; hsa-mir-15b-5p ; hsa-mir-106a-5p ; hsa-mir-23a-3p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-7-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-140-5p ; hsa-mir-181d-5p ; hsa-mir-641 ; hsa-mir-3162-5p ; hsa-mir-4262 ; hsa-mir-3617-5p ; hsa-mir-4460 ; hsa-mir-203b-5p ; hsa-mir-4727-3p ; hsa-mir-6718-5p ; hsa-mir-6760-5p ; hsa-mir-6878-5p ; hsa-mir-223-3p ; hsa-mir-504-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-4433b-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-195-5p ; hsa-mir-3163 ; hsa-mir-93-5p ; hsa-mir-143-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-4464 ; hsa-mir-4748 ; hsa-mir-21-5p ; hsa-mir-8063 ; hsa-mir-4427 ; hsa-mir-4680-3p ; hsa-mir-5187-3p ; hsa-mir-4704-5p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-3143 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-543 ; hsa-mir-6847-3p ; hsa-mir-548c-3p

Nearest miRNA

hsa-mir-10b/Upstream/861544; hsa-mir-3133/Downstream/160272;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/1022, chr2-CpG: 155/Downstream/37629

Upstream sequence

TATTTTTTTTTTTTTTTTTGTCTGGAGGAATGGGGACACCAAAACTCATTTGGCAGCAGAGGTGAGGTAAGGCCATTTGTATTGTCTGTTCTGTTAGTAG

Downstream sequence

TCATACATGCCACTTATCCCTGCCCCAGTCCCTGTTAGGAGTGTTATGTGGGTATACTGAACGTGGACCTTCCCCGAATCCAAAGAATCCAGATGCTTTG