Basic Information
VIS ID
TVIS30007935
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p13
Reference genome
GRCh37/hg19
Start
213045/232404 (Hg38)
End
213045/232404 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1-1/Downstream/1160496;
Nearest TSS
ENST00000382410/Upstream/5146; ENST00000382376/Downstream/25332;
Nearest CpG islands
None/Target, None/Upstream, chr20-CpG: 39/Downstream/46744
Nearby gene
DEFB129(No orient, 2518)
Upstream sequence
ataggtaactgCATCCAGATTTTTTAACATATTCTTCTCTGCTACATATCACCTACCTCCATTCAAAGGTCACCTTTCCCCATCCTACTCATTTTTTAAT
Downstream sequence
ACAGTGTCACTCTAAGAAAGACAAAGATTTTTCATGATGCCCCACAGTGATTCTAGAATATAACTAAAAAATATTTTCCTGGAAGTTTTTGCACAACAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate