Basic Information
VIS ID
TVIS30007942
Fusion event
HIV-SIRPB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p13
Reference genome
GRCh37/hg19
Start
1599290/1618644 (Hg38)
End
1599290/1618644 (Hg38)
Orient
-
Location type
Intronic
Target gene
SIRPB1
Nearest miRNA
hsa-mir-6869/Upstream/225683; hsa-mir-1-1/Downstream/1034133;
Nearest TSS
ENST00000382410/Upstream/7081; ENST00000437384/Downstream/1342;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/151560, chr20-CpG: 30/Downstream/117040
Upstream sequence
caatTGTTAAACTCTTACTGCTGTCATTTGGGTACAGTGTATGTGTGAGAAAAATAATTTGAAAAGTGAGACCCCTGCCCTCTAGGGCCTGTGAGGTGAC
Downstream sequence
ATCACAGCAGGGCCCAGTGGGGAATTGAGAGGCTGCTGTGCCCAGCCCTGTGGTTCTGGGGTCAGCTCCATGGCCTGAGAAGGGATCAGGACAGGTAACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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