VISDB Viral Integration Site DataBase

VIS ID

TVIS30007953

Fusion event

HIV-MCM8 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

p12.3

Reference genome

Start

End

5946217/5965571 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-155-5p ; hsa-mir-99a-5p ; hsa-mir-374a-5p ; hsa-mir-1273e ; hsa-mir-6807-5p ; hsa-mir-4266 ; hsa-mir-6894-5p ; hsa-mir-4683 ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-4779 ; hsa-mir-6888-5p ; hsa-mir-4695-5p ; hsa-mir-574-5p ; hsa-mir-943 ; hsa-mir-3136-5p ; hsa-mir-4439 ; hsa-mir-6867-5p ; hsa-mir-892a ; hsa-mir-4460 ; hsa-mir-4727-3p ; hsa-mir-6791-3p ; hsa-mir-6829-3p ; hsa-mir-3653-5p ; hsa-mir-3677-5p ; hsa-mir-6888-3p ; hsa-mir-4711-3p ; hsa-mir-3120-5p ; hsa-mir-4279 ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-8062 ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-6513-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-544a ; hsa-mir-4277 ; hsa-mir-20a-3p ; hsa-mir-584-3p ; hsa-mir-4762-5p ; hsa-mir-1285-5p ; hsa-mir-6874-3p ; hsa-mir-148b-5p ; hsa-mir-216a-5p ; hsa-mir-122-5p ; hsa-mir-1304-3p ; hsa-mir-3664-5p ; hsa-mir-4639-3p ; hsa-mir-6794-3p ; hsa-mir-144-3p ; hsa-mir-16-1-3p ; hsa-mir-3606-3p ; hsa-mir-3653-3p ; hsa-mir-3658 ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-5680 ; hsa-mir-7856-5p

Nearest miRNA

hsa-mir-103a-2/Upstream/2048000; hsa-mir-1-1/Downstream/1406037;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/14594, chr20-CpG: 95/Downstream/40182

Upstream sequence

ATTATGGCGGTCCTTCTACTCCTTTCCCTTCCCATTTTATTAACATAAAAATGTAAATATAGCTCAACAAAGAACCAAATGAATGATCAAATGCCAAGCA

Downstream sequence

AAGGAGCTGTAATTTATGTCACTGGGTTTTGTTTTGTTGGTTTTTACCCCTTAAATGAAAATGACTCAAGCATCAAATTATCTTTTCTTATACTCTGCTA