Basic Information
VIS ID
TVIS30007954
Fusion event
HIV-MCM8-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
5971677/5991031 (Hg38)
End
5971677/5991031 (Hg38)
Orient
+
Location type
ncRNA_exonic
Target gene
MCM8-AS1
Nearest miRNA
hsa-mir-103a-2/Upstream/2073460; hsa-mir-1-1/Downstream/1380577;
Nearest TSS
ENST00000382410/Upstream/40100; ENST00000619201/Downstream/9387;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/40054, chr20-CpG: 95/Downstream/14722
Upstream sequence
TTTTTCCTTTTAATGATCTCTGGCCCTCTGGGTCTTCTGGTGCCTGGCTCTCCTGAATGTCATGTTTCTACTTTGTAGACTGTTCATCTGTCGAGCAAAC
Downstream sequence
TAAGGGGTACACTACCCTGCTCCTTTTCTCTCTTAACCTGTAACATTCTCCTCTTGAGGCTTTACCATTGCTCAATTTCTGCAGGCCTTAGACCATAGAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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