Basic Information
VIS ID
TVIS30007958
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
13813158/13832512 (Hg38)
End
13813158/13832512 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/3182817; hsa-mir-1-1/Downstream/4638103;
Nearest TSS
ENST00000382410/Upstream/15854; ENST00000492055/Downstream/18907;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/47249, chr20-CpG: 101/Downstream/162610
Nearby gene
NDUFAF5(No orient, 14091)
Upstream sequence
taatactccattgtatggatataccacattctgtatatccatctgttgatagatatttaggtcgtttccactttttgactgttgtggataatgctgctat
Downstream sequence
gaatgtttgtgtacaagtttttacgtaaacatgttttcaattcttttacgtgtatactaagcagcagaattgctggctcatatagtaactctatgcttaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate