Basic Information
VIS ID
TVIS30007959
Fusion event
HIV-DTD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
18737150/18756506 (Hg38)
End
18737150/18756506 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA20A
Target gene
DTD1
miRNAs that regulate target gene
hsa-mir-145-5p ; hsa-mir-16-5p ; hsa-mir-142-3p
Nearest miRNA
hsa-mir-103a-2/Upstream/285815; hsa-mir-1-1/Downstream/7451680;
Nearest TSS
ENST00000382410/Upstream/57797; ENST00000609087/Downstream/37487;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/168058, chr20-CpG: 155/Downstream/455309
Upstream sequence
taacatttaagtctttaatccatcttgaattaattttgtataaggtataaggaagggatccagtttcagctttctacatatggctagccagttttcccag
Downstream sequence
caccatttattaaataggaaatcctttccccatttcttgtttttgtcagttttgtcaaagatcagatagttgtagatgtgtggaattatttctgaggact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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