Basic Information
VIS ID
TVIS30007960
Fusion event
HIV-NAA20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
20011873/20031229 (Hg38)
End
20011873/20031229 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA20A
Target gene
NAA20
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-let-7d-5p ; hsa-let-7b-5p ; hsa-mir-1255a ; hsa-mir-1255b-5p ; hsa-mir-513a-5p ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-let-7c-5p ; hsa-let-7a-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-1182 ; hsa-mir-1207-5p ; hsa-mir-1304-5p ; hsa-mir-1827 ; hsa-mir-193a-5p ; hsa-mir-200c-5p ; hsa-mir-3664-5p ; hsa-mir-4714-5p ; hsa-mir-4763-3p ; hsa-mir-514a-5p ; hsa-mir-526b-5p ; hsa-mir-550a-3p ; hsa-mir-550b-3p ; hsa-mir-578 ; hsa-mir-6765-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-940
Nearest miRNA
hsa-mir-103a-2/Upstream/1560538; hsa-mir-1-1/Downstream/6176957;
Nearest TSS
ENST00000382410/Upstream/13428; ENST00000494029/Downstream/7223;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/13314, chr20-CpG: 63/Downstream/20867
Upstream sequence
gaacagaaagagcaaaaaagagacaagatattcttgaacaacaacaaaaatgggtgatgtgcccctccaggtatcagactgtaaagagtgagactatatc
Downstream sequence
ttagtgctgtagttatctagaccagtgttacagaatttgagaaacagacccaagaatatatggactttaacataccacagaagaggcattgcacatcaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate