Basic Information
VIS ID
TVIS30007964
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
23871683/23891046 (Hg38)
End
23871683/23891046 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/5420355; hsa-mir-1-1/Downstream/2317140;
Nearest TSS
ENST00000382410/Upstream/11296; ENST00000457274/Downstream/95749;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/252997, chr20-CpG: 25/Downstream/97466
Nearby gene
CST5(No orient, 11303)
Nearest cancer related gene
CST5(TSG, No orient, 11303)
Upstream sequence
caccatTACTGCCACCACCAAGACCATCACCATCAAAACCAGTACCACCATAATCCCcaccatcactaccatctttaccaccatcaccattatcaccatc
Downstream sequence
atcatcactatcatcaccaccatcatcatcattatcaatacgaccgtctctgccgtcatcaccatcaccaccaccactattactaccatcactatcacca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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