Fusion event
HIV-SYNDIG1 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
24594838/24614202 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-103a-2/Upstream/6143511; hsa-mir-1-1/Downstream/1593984;
Upstream sequence
tcctgcctcagcctcccaagtagctgggactataggcacacaccaccatgcccaccacacctggctaatttttaaattttttgtagagatgcggtctcac
Downstream sequence
tatgttgctcaggctggtcttgaactcttgggcttaaatgatcctcccacctcagcctcccaaattgctgggattacaggcatgagccactgcacccagc
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.