VISDB Viral Integration Site DataBase

VIS ID

TVIS30007967

Fusion event

HIV-ABHD12 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

p11.21

Reference genome

Start

End

25315506/25334870 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-484 ; hsa-mir-423-3p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-638 ; hsa-mir-4713-3p ; hsa-mir-661 ; hsa-mir-6778-3p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-1205 ; hsa-mir-4485-5p ; hsa-let-7a-2-3p ; hsa-let-7g-3p ; hsa-mir-1247-3p ; hsa-mir-302a-5p ; hsa-mir-3177-5p ; hsa-mir-320a ; hsa-mir-320b ; hsa-mir-320c ; hsa-mir-320d ; hsa-mir-4264 ; hsa-mir-4429 ; hsa-mir-4521 ; hsa-mir-4532 ; hsa-mir-4706 ; hsa-mir-4753-5p ; hsa-mir-488-3p ; hsa-mir-519a-3p ; hsa-mir-519b-3p ; hsa-mir-519c-3p ; hsa-mir-552-3p ; hsa-mir-5681a ; hsa-mir-5692a ; hsa-mir-622 ; hsa-mir-6730-5p ; hsa-mir-6800-5p ; hsa-mir-6802-5p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-766-5p ; hsa-mir-9-3p

Nearest miRNA

hsa-mir-103a-2/Upstream/6864179; hsa-mir-1-1/Downstream/873316;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/86104, chr20-CpG: 141/Downstream/54829

Upstream sequence

gatcccttccttacaccttatacaaaaatcaattcaagatggattaaagacttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggca

Downstream sequence

ttaccattcaggacataggcatgggcaaggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaatttaact