VISDB Viral Integration Site DataBase

VIS ID

TVIS30007968

Fusion event

HIV-POFUT1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q11.21

Reference genome

Start

End

30824851/32237048 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-122-5p ; hsa-mir-148a-3p ; hsa-mir-16-5p ; hsa-mir-92b-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-126-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-4311 ; hsa-mir-6770-5p ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-3191-5p ; hsa-mir-6868-3p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6744-5p ; hsa-mir-3188 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-2467-5p ; hsa-mir-3975 ; hsa-mir-942-5p ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-518c-5p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-4477a ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-548av-3p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-3180-5p ; hsa-mir-665 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-4753-5p ; hsa-mir-1321 ; hsa-mir-6768-3p ; hsa-mir-502-5p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-298 ; hsa-mir-2277-3p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-1306-5p ; hsa-mir-129-5p ; hsa-mir-6885-3p ; hsa-mir-6083 ; hsa-mir-6772-3p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-642a-5p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-6777-3p ; hsa-mir-3121-3p

Nearest miRNA

hsa-mir-103a-2/Upstream/629808; hsa-mir-1-1/Downstream/747;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/29010, chr20-CpG: 22/Downstream/40696

Upstream sequence

ccagagccagtttccattagctgccatgctctGCTGCCTCTAATTCACAGAATGCACTTTCTACCCTGTGTGCCATGGAGACCTCCTATGGAAAAATGAT

Downstream sequence

CAGCCACCTTACCTTCTACTGGGTACCTGCTGTGAGTCTGCCTATGCCAGAAGGATTAAGGAGGGGAGGTTACCCAAGAAACAAAGCCTACATGCCGCTT