VISDB Viral Integration Site DataBase

VIS ID

TVIS30007969

Fusion event

HIV-KIF3B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q11.21

Reference genome

Start

End

30886863/32299060 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-324-5p ; hsa-mir-222-3p ; hsa-mir-10a-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-181d-5p ; hsa-mir-646 ; hsa-mir-4424 ; hsa-mir-4682 ; hsa-mir-8077 ; hsa-mir-1292-5p ; hsa-mir-4471 ; hsa-mir-8059 ; hsa-mir-874-3p ; hsa-mir-146b-3p ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-7976 ; hsa-mir-4468 ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-410-3p ; hsa-mir-6750-3p ; hsa-mir-1226-5p ; hsa-mir-129-5p ; hsa-mir-1304-5p ; hsa-mir-1914-3p ; hsa-mir-3184-5p ; hsa-mir-423-5p ; hsa-mir-4294 ; hsa-mir-4716-3p ; hsa-mir-4723-5p ; hsa-mir-5194 ; hsa-mir-5698 ; hsa-mir-6734-5p ; hsa-mir-6738-5p ; hsa-mir-6794-5p ; hsa-mir-6834-5p ; hsa-mir-6870-5p ; hsa-mir-7111-5p ; hsa-mir-8055

Nearest miRNA

hsa-mir-103a-2/Upstream/61213; hsa-mir-1-1/Downstream/1750059;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/21072, chr20-CpG: 104/Downstream/58784

Upstream sequence

CCTATCCCACTTTTTAGTACTTATACATACATAAATGCAAATCCATGAGCACCGTATTTTTTTGTAAATTCCTAATCGTAACTGTCACtctgcagctttg

Downstream sequence

tttctcactcagcctatttatttatccatgttaaatctgtaagcctaattcagagattggcaaacactttctgtaaaaggccagatagtaaatattttag