Basic Information
VIS ID
TVIS30007978
Fusion event
HIV-PIGU integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
33213036/34625232 (Hg38)
End
33213036/34625232 (Hg38)
Orient
+
Location type
Intronic
Target gene
PIGU
miRNAs that regulate target gene
hsa-let-7b-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/158814; hsa-mir-1-1/Downstream/365144;
Nearest TSS
ENST00000382410/Upstream/9139; ENST00000414082/Downstream/9471;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/65292, chr20-CpG: 34/Downstream/51905
Nearest cancer related gene
PIGU(OG, No orient, 0)
Upstream sequence
aggccaaggcgggtggatcacctgaggtcaggagtacaagaccagcctgaccaacatggagaaaccccgtctctactaaaaatgcaaaattcggatgtgg
Downstream sequence
tggcgcatgcctgtaatcccagctattcgggaaactgaggcaggagaatcacctgaacccgggaggcagaggttgtggtgagccgagattgtgccattgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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