Basic Information
VIS ID
TVIS30007981
Fusion event
HIV-UQCC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
33980602/35392799 (Hg38)
End
33980602/35392799 (Hg38)
Orient
+
Location type
Intronic
Target gene
UQCC1
miRNAs that regulate target gene
hsa-mir-24-3p ; hsa-mir-1226-3p
Nearest miRNA
hsa-mir-103a-2/Upstream/402302; hsa-mir-1-1/Downstream/61155;
Nearest TSS
ENST00000382410/Upstream/45573; ENST00000374375/Downstream/1404;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/100387, chr20-CpG: 41/Downstream/41410
Upstream sequence
aggcatagtgaaaagaccaggaaatacaagaaaaaagcaagatgtcctcagaagggcagggcttacacattaattggagggaATTTTTAAGTAGATTATA
Downstream sequence
TATGTTACataaattatataatatatataattaCATATAGCAAACATATTTTTAATTGCATCGAATACGAAAAAGAAAGTTAATGACTACAGataaaaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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