Fusion event
HIV-PLCG1-AS1 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
39726793/41098153 (Hg38)
Location type
ncRNA_exonic
Nearest miRNA
hsa-mir-103a-2/Upstream/2581521; hsa-mir-1-1/Downstream/70870;
Upstream sequence
CTGTATTTTTTTGTTTTTTCAAAATTCATTAATTGAGATTGGCTACTTCCAGAAACCTTTGACTGAAAAAATGGTGCTTGGGTGTATTTGCAAAGAAACC
Downstream sequence
CAAGGACTTATTAGTGTATTTTCGTTGTTTTTCTTTCATCTCCCCATTTTCTTTTGACTAGGAAATGACTAATGAAGAGAAGAATATTATCACCAACCTA
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.