VISDB Viral Integration Site DataBase

VIS ID

TVIS30008000

Fusion event

HIV-YWHAB integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q13.12

Reference genome

Start

End

43528173/44899532 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1301-3p ; hsa-mir-877-3p ; hsa-mir-378a-5p ; hsa-mir-221-3p ; hsa-mir-218-5p ; hsa-mir-627-3p ; hsa-mir-6758-3p ; hsa-mir-5094 ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-551b-5p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-152-3p ; hsa-mir-744-3p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-4683 ; hsa-mir-3135b ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-4781-3p ; hsa-mir-4457 ; hsa-mir-7850-5p ; hsa-mir-4531 ; hsa-mir-1255a ; hsa-mir-1255b-5p ; hsa-mir-1273h-5p ; hsa-mir-1909-5p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3614-5p ; hsa-mir-3661 ; hsa-mir-3663-3p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4269 ; hsa-mir-4299 ; hsa-mir-4325 ; hsa-mir-542-3p ; hsa-mir-5582-5p ; hsa-mir-619-3p ; hsa-mir-631 ; hsa-mir-6715b-5p ; hsa-mir-6731-5p ; hsa-mir-6744-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6788-5p ; hsa-mir-6878-5p ; hsa-mir-769-5p ; hsa-mir-8085 ; hsa-mir-887-5p ; hsa-mir-130b-5p ; hsa-mir-4753-3p ; hsa-mir-6809-3p

Nearest miRNA

hsa-mir-103a-2/Upstream/491329; hsa-mir-1-1/Downstream/525978;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/13288, chr20-CpG: 50/Downstream/10443

Upstream sequence

tcccaccactgtacttcagcctgggtgacagagtgagactctgtctcaaacaaacagacaaagcacacaaaaaaaCCTGACATTACTACTACTGTTTAAA

Downstream sequence

GTAGCATTTCATGTTTTTATAGCTCAGGATATTAGTGTATTTTTATACTGTGTGGCACAGATTGATATATCAATATTTAAACCAACAGTACATAAAATTA