Basic Information
VIS ID
TVIS30008014
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
48426118/49809581 (Hg38)
End
48426118/49809581 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/2642523; hsa-mir-1-1/Downstream/54278;
Nearest TSS
ENST00000382410/Upstream/95703; ENST00000489787/Downstream/3132;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/95436, chr20-CpG: 36/Downstream/3054
Nearby gene
SLC9A8(No orient, 3132)
Upstream sequence
atggtggcacacgcctgtaattccagctacttgggaggctgaagcaggaatcgcttgaacccaggaggcagaggttgcagtaagccgagatcgtgccact
Downstream sequence
gcactccagcctgagtgacagagtgagactccatcttaaaaTACAACAACAggccaggcctggtggctcatgcctgtaatcccagcacttggggaggcca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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