Basic Information
VIS ID
TVIS30008015
Fusion event
HIV-SLC9A8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
48481415/49864878 (Hg38)
End
48481415/49864878 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLC9A8
miRNAs that regulate target gene
hsa-mir-192-3p ; hsa-mir-6807-5p ; hsa-mir-4792 ; hsa-mir-4480 ; hsa-mir-6830-5p ; hsa-mir-4999-5p ; hsa-mir-4718 ; hsa-mir-1537-5p ; hsa-mir-3607-3p ; hsa-mir-6787-3p ; hsa-mir-3065-3p ; hsa-mir-3662 ; hsa-mir-3134 ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-596 ; hsa-mir-4293
Nearest miRNA
hsa-mir-103a-2/Upstream/925; hsa-mir-1-1/Downstream/720908;
Nearest TSS
ENST00000382410/Upstream/51984; ENST00000490250/Downstream/21493;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/51770, chr20-CpG: 40/Downstream/41187
Upstream sequence
AGTTTGGCATGATGATCATTTTTGCTTATCTGCCTTATGGGCTTGCAGAAGGAATCTCACTCTCAGGTAAGTGACAGAGAGCCTGAAAGTGCTGTGGTGA
Downstream sequence
TGGCATCTTGTCCTGCCTGGGGAAAGAGGCTTtgtcagttgggtcacttttagtcacaagagacagtcacaactcagaagagcttaagtaataaaggaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate