Basic Information
VIS ID
TVIS30008016
Fusion event
HIV-LOC105372668 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
51499490/52882951 (Hg38)
End
51499490/52882951 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105372668
Nearest miRNA
hsa-mir-103a-2/Upstream/1429974; hsa-mir-1-1/Downstream/1185457;
Nearest TSS
ENST00000382410/Upstream/20096; ENST00000329613/Downstream/89456;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/690665, chr20-CpG: 27/Downstream/90217
Nearby gene
TSHZ2(No orient, 89456)
Upstream sequence
tgaagctttttacagagttctcagaattttttatgttcatgataataccatctacaaataaagacagttgaaaatgttttctttctagtctgtatggctt
Downstream sequence
ttattacctttccttgacttattgcagtgtctagaaccccagggcaatgtgaatataaatggtgagataaaacatcattgatctatgcttgatcttaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate