Basic Information
VIS ID
TVIS30008017
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
52166401/53549862 (Hg38)
End
52166401/53549862 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/2096885; hsa-mir-1-1/Downstream/518546;
Nearest TSS
ENST00000382410/Upstream/45548; ENST00000424252/Downstream/2908;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/576381, chr20-CpG: 26/Downstream/31657
Nearby gene
LOC101927770(No orient, 2908)
Upstream sequence
actataaagaaatacctggccaggcgcggtggctcacgcctgtaatcccaacactctgggaggccaaggtgggcggatcacgaggtcaggagtccgagac
Downstream sequence
cagcctgaccaacacagtgaaaccccgtctctactaaaaatacaaaaattagccaggcatggtggcgggcgcctgtaatcccagctacttaggaagctga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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