Fusion event
HIV-chr20 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
52270044/53653505 (Hg38)
Nearest miRNA
hsa-mir-103a-2/Upstream/2200528; hsa-mir-1-1/Downstream/414903;
Nearest cancer related gene
Upstream sequence
TGATAGTTGCATATTTGAAGGAAGCAGAGGCCTCAGCTGGTTGCTAAAAAATCAATTTAAAAAATAAATGATGGAGCTCAGGCATACGGCAAGTTGTGGA
Downstream sequence
CTGAGAATTTGGTTTCAGGATTAGGGTGTTTCTACTTGGAAATTTACCATCCAGTTCCCTGGACCTGTCTTGGGGCATTTttgttgttgttgttgttgtt
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.