Basic Information
VIS ID
TVIS30008019
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
52340604/53724065 (Hg38)
End
52340604/53724065 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/2271088; hsa-mir-1-1/Downstream/344343;
Nearest TSS
ENST00000382410/Upstream/114158; ENST00000450473/Downstream/77253;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/63553, chr20-CpG: 136/Downstream/448648
Nearby gene
ZNF217(No orient, 140968)
Nearest cancer related gene
ZNF217(OG, No orient, 140968)
Upstream sequence
ACAGAAATATGAATGGGGTACAATGGGGAGAAACCAAGAAGAGGTTCAGTTCTATTATTGGGTGGGAAAGCGGTCTAAAAATATTTTATAGAGGAACTGG
Downstream sequence
TATCTAAAATTTGAGTATTGAAGAAGGTGGTGTTGGCTATTATCTACTATTACTAGGAAGAAtttttttttgagacagagtctcactctgtcacccaggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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