VISDB Viral Integration Site DataBase

VIS ID

TVIS30008023

Fusion event

HIV-STX16 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q13.32

Reference genome

Start

End

57243168/58668112 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-24-3p ; hsa-mir-455-3p ; hsa-mir-193b-3p ; hsa-mir-324-3p ; hsa-mir-331-3p ; hsa-mir-93-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-148a-3p ; hsa-mir-130a-3p ; hsa-mir-152-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-148b-3p ; hsa-mir-590-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-1252-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-3928-3p ; hsa-mir-548aw ; hsa-mir-383-3p ; hsa-mir-3065-3p ; hsa-mir-100-3p ; hsa-mir-659-3p ; hsa-mir-29b-2-5p ; hsa-mir-6499-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-144-3p ; hsa-mir-101-3p ; hsa-mir-3150b-5p ; hsa-mir-3150a-5p ; hsa-mir-3646 ; hsa-mir-299-5p ; hsa-mir-544a ; hsa-mir-6514-3p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-466 ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-3607-3p ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-3158-5p ; hsa-mir-6787-3p ; hsa-mir-6736-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-519e-3p ; hsa-mir-515-3p ; hsa-mir-33b-3p ; hsa-mir-4724-5p ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-8084 ; hsa-mir-30e-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30d-5p

Nearest miRNA

hsa-mir-103a-2/Upstream/1346521; hsa-mir-1-1/Downstream/149503;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/16846, chr20-CpG: 102/Downstream/24359

Upstream sequence

GCAGAAGATGAAAGAATTGGCCAGCCTTCATGACAAGCATTTAAACAGACCCACCCTGGATGACAGCAGCGAAGAGGAACATGCCATTGAGATAACTACC

Downstream sequence

CAAGAGATCACTCAGGTGAGGAGTGCAAGTGAGTCCTGGGGAAACCAGCGAGCCTTCTCATGGCAATCTCAGAAACTAGAGTGTTACTCAGAATCAGTCT