Basic Information
VIS ID
TVIS30008025
Fusion event
HIV-TUBB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
57597695/59022640 (Hg38)
End
57597695/59022640 (Hg38)
Orient
+
Location type
Intronic
Target gene
TUBB1
miRNAs that regulate target gene
hsa-mir-183-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/204327; hsa-mir-1-1/Downstream/1285834;
Nearest TSS
ENST00000382410/Upstream/3386; ENST00000610729/Downstream/9652;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/15100, chr20-CpG: 16/Downstream/1507
Upstream sequence
CAACAGCTTTAATGTATATAATGGCATGAATTTAATAGGAGGAAAATCCAATTTAGTACTTTGTGTTTGACATTTTATTTAAGGAGTTCAGGTGGGGAGA
Downstream sequence
AAATGCAATCTTCATATTACTTCACATTGCTTAGTAGAGGCAAAAAGCGAATGATGCCATGGTTATTTATGAAAAGGCCCTAAAAGAATGTCTTGGGGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate