Basic Information
VIS ID
TVIS30008031
Fusion event
HIV-DIDO1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
61565425/62934073 (Hg38)
End
61565425/62934073 (Hg38)
Orient
-
Location type
Intronic
Target gene
DIDO1
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-744-5p ; hsa-mir-93-3p ; hsa-mir-615-3p ; hsa-mir-181b-5p ; hsa-mir-92a-3p ; hsa-mir-3157-5p ; hsa-mir-3941 ; hsa-mir-582-5p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-198 ; hsa-mir-6504-3p ; hsa-mir-144-3p ; hsa-mir-101-3p ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-33a-3p ; hsa-mir-409-3p
Nearest miRNA
hsa-mir-1-1/Upstream/369060; hsa-mir-124-3/Downstream/244427;
Nearest TSS
ENST00000382410/Upstream/4776; ENST00000497101/Downstream/3879;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/4471, chr20-CpG: 124/Downstream/3384
Nearest cancer related gene
DIDO1(TSG, No orient, 0)
Upstream sequence
GACACTGGAAGCTCTGAACACCTGGTTGCCCCTCAGCTGACTGTAAGGGCCAAGCCTTTGGTTTCTCTCATCCACATGCCCACCTCTGTCATAGGAAAGC
Downstream sequence
TCAGGCAGTTGATGAATCCAGCAGGCTGAAGTCCTTGTCACTGTCCCAGATGCCAACCCGTGTGGCCCTGCACCCTCTCCTGTCCCGGGACCCACCTAcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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