Basic Information
VIS ID
TVIS30008037
Fusion event
HIV-DNAJC5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62543947/63912594 (Hg38)
End
62543947/63912594 (Hg38)
Orient
-
Location type
Intronic
Target gene
DNAJC5
miRNAs that regulate target gene
hsa-mir-7-5p ; hsa-mir-93-3p ; hsa-mir-23b-3p ; hsa-mir-15b-5p ; hsa-mir-34a-5p ; hsa-mir-31-5p
Nearest miRNA
hsa-mir-1-1/Upstream/625728; hsa-mir-1914/Downstream/6855;
Nearest TSS
ENST00000382410/Upstream/17412; ENST00000623569/Downstream/29015;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/16908, chr20-CpG: 72/Downstream/6766
Upstream sequence
CTTTTACCCTTTTAACTGTGTTCCAAGTCCCTGTCCCTAGCATGCTCTGATTGTCAGTCCTTCCCTTGCCTGACCTACCTGTCTGAGTATCCTTTGGCAG
Downstream sequence
TCAGGtttttgtttgtttgtttttgagacggagtctcgctctgtcgcccaggctgcaggctggagtgcagtggcgtgatctcagctcactgcaacctcca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate