Basic Information
VIS ID
TVIS30008049
Fusion event
HIV-chr21 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
21692828/20320516 (Hg38)
End
21692828/20320516 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/1634352; hsa-mir-155/Downstream/2758768;
Nearest TSS
ENST00000624081/Upstream/61696; ENST00000486367/Downstream/482547;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/2074959, chr21-CpG: 89/Downstream/676589
Nearby gene
LINC00320(No orient, 422080)
Upstream sequence
CATTTGATTAATATGATGCAATTTGCGGTTTGTATTAATATTATATTAAATGTAGAATGCTAAAACATTAAAGTAAAATAGCATTTCTAATATTTGCTAC
Downstream sequence
ACATACATTAACATCTTCTCAAACTAACCAAAACATAATCCTTGCTATTTAGTTGTACTGAAACAAAGCAGTTATCCAGTTCAACTTTTATGTTTTATAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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