Basic Information
VIS ID
TVIS30008050
Fusion event
HIV-LOC107985508 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
23597322/22225003 (Hg38)
End
23597322/22225003 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107985508
Nearest miRNA
hsa-let-7c/Upstream/3538839; hsa-mir-155/Downstream/854281;
Nearest TSS
ENST00000624081/Upstream/15064; ENST00000421604/Downstream/295055;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/1226758, chr21-CpG: 28/Downstream/3136791
Nearby gene
LINC00308(No orient, 108475)
Upstream sequence
CAAATAAGAAGATAAAACTATGTAAGTCATAATGAGCAGAACAAGTTAAAGACAGAAATATACCCTCAAAATTTTAGTTAAAAAATTATCAGGTGCTGTC
Downstream sequence
TGTATGATACATTATTATAGTTTATCAGCTATTGCTTGGAAAACCTAAACTTTTCTCTTTTTTATCGGTACATTTGTTTTGGAGAGAATTTTATTTTCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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