Basic Information
VIS ID
TVIS30008051
Fusion event
HIV-chr21 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
25049190/23676872 (Hg38)
End
25049190/23676872 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/597480; hsa-mir-155/Downstream/1897108;
Nearest TSS
ENST00000624081/Upstream/199231; ENST00000415269/Downstream/213669;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/2678627, chr21-CpG: 28/Downstream/1684922
Nearby gene
D21S2088E(No orient, 292034)
Upstream sequence
CAAGTAATCCAGTTACATCCATGAAGTAAAATAACTGTGGCTGTCATCTCCAACAGGGCAGGTACATCTCTAGGAAATTTATCACTTTTAACTGTTTATC
Downstream sequence
TCCTTCACTGACACTAAATTGTGAAAAAAATGCCTTTATTTGTAAACGTCTTCTGTCCATGCATAATTTGCCTAAGCAGACTTTAAGTGGGAGGAAAAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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