Basic Information
VIS ID
TVIS30008052
Fusion event
HIV-LOC112268279 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
28452656/27080337 (Hg38)
End
28452656/27080337 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC112268279
Nearest miRNA
hsa-let-7c/Upstream/126294; hsa-mir-3197/Downstream/3294957;
Nearest TSS
ENST00000624081/Upstream/113824; ENST00000447384/Downstream/280827;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/112419, chr21-CpG: 46/Downstream/63146
Nearby gene
ADAMTS5(No orient, 113217)
Upstream sequence
ttttttacaccatcatgtggaaggaaacgatagttaaacttttcttcttttttaatcttttttgagacagagtctcgctctgtctcccaggctggagtgc
Downstream sequence
agtggtgcgatctctgctcactgcaacccctgcctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggactacaggtgcatgccacc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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