Basic Information
VIS ID
TVIS30008053
Fusion event
HIV-GRIK1-AS2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
30998396/29626076 (Hg38)
End
30998396/29626076 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
GRIK1-AS2
Nearest miRNA
hsa-let-7c/Upstream/2672033; hsa-mir-3197/Downstream/749218;
Nearest TSS
ENST00000624081/Upstream/30036; ENST00000608759/Downstream/31330;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/326611, chr21-CpG: 61/Downstream/312992
Upstream sequence
atatttggagacagggcctttatagaggtaattagggttaaatgaggtcataaaaatagggccctaatccaatatcttagtccatttgtattgctgtaac
Downstream sequence
aaaataccacagactaatttatttttaaaaagaaatttgtttatcacaggcttggaggctgggaggtctaacattaaggtgccagcatctggtgagggcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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