Basic Information
VIS ID
TVIS30008054
Fusion event
HIV-TIAM1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.11
Reference genome
GRCh37/hg19
Start
32506152/31133834 (Hg38)
End
32506152/31133834 (Hg38)
Orient
-
Location type
Intronic
Target gene
TIAM1
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-31-5p ; hsa-mir-335-5p ; hsa-mir-744-5p ; hsa-mir-93-3p ; hsa-mir-769-3p ; hsa-mir-615-3p ; hsa-mir-221-3p ; hsa-let-7b-5p ; hsa-mir-10b-5p ; hsa-mir-329-3p ; hsa-mir-141-3p ; hsa-mir-10a-5p ; hsa-mir-342-3p ; hsa-mir-29c-3p ; hsa-mir-22-3p ; hsa-mir-182-5p
Nearest miRNA
hsa-let-7c/Upstream/758456; hsa-mir-3197/Downstream/2416828;
Nearest TSS
ENST00000624081/Upstream/3528; ENST00000433071/Downstream/27075;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/1194046, chr21-CpG: 24/Downstream/117994
Upstream sequence
ggcctcttggcccaaagcctaaaatgtactatgtagcctttaacagaaaaGAGggtcgggcgcggtggctcatacctgtaatcccagcactttgggaggc
Downstream sequence
cgaggcgggcagattacaaggtcaagagattgagaccatcttggccaacatggtgaaactccatctctactaaaaacacaaaaattagctgggcgtggtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate