Basic Information
VIS ID
TVIS30008057
Fusion event
HIV-chr21 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.11
Reference genome
GRCh37/hg19
Start
33438839/32066526 (Hg38)
End
33438839/32066526 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/1691148; hsa-mir-3197/Downstream/1484136;
Nearest TSS
ENST00000624081/Upstream/44744; ENST00000453549/Downstream/19769;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/192230, chr21-CpG: 63/Downstream/212071
Nearby gene
LINC00159(No orient, 13955)
Upstream sequence
gtgctgggtactatgcttggcgctttatatgaatcatctcatttactttcacaacagctgaggcaggagctccttttgtcatacccattttacagatggg
Downstream sequence
caattgaggatcagagaaattaagaaatgagcccaaagtcacatagctagcaagtggcagagctgggttttgaaccagactttttggctccagagtcctc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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