Basic Information
VIS ID
TVIS30008071
Fusion event
HIV-DOP1B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.12
Reference genome
GRCh37/hg19
Start
37665933/36293635 (Hg38)
End
37665933/36293635 (Hg38)
Orient
-
Location type
UTR3
Target gene
DOP1B
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-let-7c/Upstream/572827; hsa-mir-3197/Downstream/3153375;
Nearest TSS
ENST00000624081/Upstream/47334; ENST00000485933/Downstream/26554;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/48061, chr21-CpG: 99/Downstream/26275
Upstream sequence
ATCGAATATGATTTTCTGGAACATCCAGAATGTTAACCATGTGAGAGAGAATATGTTTAATCCATGTATTGGTACTTTACTGAAAACCAGGTTATATTCT
Downstream sequence
AAAGAAGAAAGAAGGCAGGATAGTGCTTTTGAACAAGCCTATTTCCATTTTGAAAGTAGATTTCAggctaggtgcggtggctcacacctgtaatctcagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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