VISDB Viral Integration Site DataBase

VIS ID

TVIS30008083

Fusion event

HIV-PKNOX1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr21

Cytoband

q22.3

Reference genome

Start

End

44453312/43033202 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-500a-5p ; hsa-mir-4503 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-100-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-20a-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-106b-5p ; hsa-mir-93-5p ; hsa-mir-5698 ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-143-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-6499-3p ; hsa-mir-5693 ; hsa-mir-764 ; hsa-mir-6514-5p ; hsa-mir-552-3p ; hsa-mir-216b-3p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-488-3p ; hsa-mir-377-3p ; hsa-mir-4777-3p ; hsa-mir-342-3p ; hsa-mir-1273g-3p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6768-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-25-3p ; hsa-mir-3160-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-3689d ; hsa-mir-377-5p ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-4803 ; hsa-mir-500a-3p ; hsa-mir-5186 ; hsa-mir-558 ; hsa-mir-6086 ; hsa-mir-6134 ; hsa-mir-6516-5p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-7847-3p ; hsa-mir-92a-3p ; hsa-mir-92b-3p

Nearest miRNA

hsa-let-7c/Upstream/82188; hsa-mir-6070/Downstream/576685;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/57462, chr21-CpG: 20/Downstream/20527

Nearest cancer related gene

PKNOX1(TSG, No orient, 0)

Upstream sequence

TTCCTGCCCTGCACCTGTGGAGCAGGAGTGGCAGGGCTGGCTGTGCTGGGTTCCAGCTCGCTCCCACCGAGGGACTAGCTTGGCCTTTGCGCTTTGATTC

Downstream sequence

CAGATAGTAAGATGAGTGGAAGTGTTTATCGAGCATGCAAAAGAAACCCTCACGGCTAAGGGCTCTGGGAGTTGTGTCTGTGTGACCTGAGAGTGATCCA