Basic Information
VIS ID
TVIS30008085
Fusion event
HIV-AGPAT3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
45292025/43872144 (Hg38)
End
45292025/43872144 (Hg38)
Orient
-
Location type
Intronic
Target gene
AGPAT3
miRNAs that regulate target gene
hsa-mir-744-5p ; hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-24-3p ; hsa-mir-18a-3p ; hsa-mir-149-5p ; hsa-mir-100-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p
Nearest miRNA
hsa-let-7c/Upstream/262155; hsa-mir-6815/Downstream/1606122;
Nearest TSS
ENST00000624081/Upstream/4902; ENST00000498670/Downstream/10400;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/6126, chr21-CpG: 24/Downstream/71448
Upstream sequence
tctagagttgactGTGCAGGTCTTCCGAGGTGTCTTTTGATAAAGCACCGTGGTATTTCACATTCCACCTGACACTCTGTGCttacatttattcccaggt
Downstream sequence
gcccttattattgttcttgcttttgtaaatggtgtttttttttttttttcttttgagacaaaatcttgctctgtcacccaggctggagtgcagtggcagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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