Basic Information
VIS ID
TVIS30008101
Fusion event
HIV-DIP2A-IT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
47887680/46467767 (Hg38)
End
47887680/46467767 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
DIP2A-IT1
Nearest miRNA
hsa-let-7c/Upstream/989441;
Nearest TSS
ENST00000624081/Upstream/8656; ENST00000473752/Downstream/36546;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/8104, chr21-CpG: 19/Downstream/30817
Upstream sequence
ACTGACTAGTTGCTTGTCTGTTGCACTAACAAAATTTATTATTCATGTTTCGGGAATACCCTCTTTAGGTTTTGTTTGTTTTTTTTTTCATAGTAAATTA
Downstream sequence
TCCCAGTACAAGTGTCTTTGTACAAAATTTTGATTTCTAAGTTTCTTTAAAAATATCAATGCCAgctgggcccagtggctcacacctataatcccagcac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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