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TVIS30008105
Basic Information
VIS ID
TVIS30008105
Fusion event
HIV-DIP2A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
47917499/46497586 (Hg38)
End
47917499/46497586 (Hg38)
Orient
+
Location type
Intronic
Target gene
DIP2A
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-423-5p
;
hsa-mir-484
;
hsa-mir-125a-5p
;
hsa-mir-142-3p
;
hsa-mir-548c-3p
;
hsa-mir-4435
;
hsa-mir-7151-3p
;
hsa-mir-5095
;
hsa-mir-3194-5p
;
hsa-mir-1204
;
hsa-mir-132-5p
;
hsa-mir-6504-3p
;
hsa-mir-3934-5p
;
hsa-mir-6858-3p
;
hsa-mir-552-3p
;
hsa-mir-6818-3p
;
hsa-mir-593-3p
;
hsa-mir-6895-3p
;
hsa-mir-4496
;
hsa-mir-6124
;
hsa-mir-6859-5p
;
hsa-mir-3916
;
hsa-mir-3125
;
hsa-mir-583
;
hsa-mir-7641
;
hsa-mir-6778-3p
;
hsa-mir-4695-3p
;
hsa-mir-2276-3p
;
hsa-mir-4638-5p
;
hsa-mir-1307-3p
;
hsa-mir-1281
;
hsa-mir-4485-5p
;
hsa-mir-6791-5p
;
hsa-mir-4292
;
hsa-mir-4308
;
hsa-mir-548aw
;
hsa-mir-513b-5p
;
hsa-mir-1185-2-3p
;
hsa-mir-1185-1-3p
;
hsa-let-7f-2-3p
;
hsa-mir-4789-5p
;
hsa-mir-98-3p
;
hsa-let-7f-1-3p
;
hsa-let-7b-3p
;
hsa-let-7a-3p
;
hsa-mir-19b-3p
;
hsa-mir-19a-3p
;
hsa-mir-1468-3p
;
hsa-mir-548x-5p
;
hsa-mir-548g-5p
;
hsa-mir-548f-5p
;
hsa-mir-548aj-5p
;
hsa-mir-125b-2-3p
;
hsa-mir-4457
;
hsa-mir-8063
;
hsa-mir-1179
;
hsa-mir-551b-5p
;
hsa-mir-3161
;
hsa-mir-891b
;
hsa-mir-550b-3p
;
hsa-mir-3664-5p
;
hsa-mir-514a-5p
;
hsa-mir-4714-5p
;
hsa-mir-4659b-3p
;
hsa-mir-4659a-3p
;
hsa-mir-6875-3p
;
hsa-mir-3157-5p
;
hsa-mir-4465
;
hsa-mir-26b-5p
;
hsa-mir-26a-5p
;
hsa-mir-1297
;
hsa-mir-676-5p
;
hsa-mir-4691-3p
;
hsa-mir-5697
;
hsa-mir-6741-3p
;
hsa-mir-6833-3p
;
hsa-mir-4768-5p
;
hsa-mir-6873-3p
;
hsa-mir-6867-3p
;
hsa-mir-630
;
hsa-mir-6817-3p
;
hsa-mir-7110-3p
;
hsa-mir-6845-3p
;
hsa-mir-4685-3p
;
hsa-mir-4287
;
hsa-mir-7113-3p
;
hsa-mir-4469
Nearest miRNA
hsa-let-7c/Upstream/1019260;
Nearest TSS
ENST00000624081/Upstream/38475;
ENST00000473752/Downstream/6727;
Nearest CpG islands
None/Target,
chr21-CpG: 261/Upstream/37923
,
chr21-CpG: 19/Downstream/998
Upstream sequence
ACAGGTTGTAACCAGGACTTATATGCAACAGTATAAGACTATTTGGAAAGTTTTGCGGTTGATTTTGTTGTTGTTTTATTGTTGGTACCATTAGAAATGA
Downstream sequence
AAACTTTTATATGAGGTTTCTCTCTAGCAATAATGTATTTTAGTCTTCCTGTTAAACTGTACAAGATGTCGATAGTGTCTAATGACTTCACATTCATGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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