Basic Information
VIS ID
TVIS30008106
Fusion event
HIV-PRMT2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
48059387/46639475 (Hg38)
End
48059387/46639475 (Hg38)
Orient
+
Location type
Intronic
Target gene
PRMT2
miRNAs that regulate target gene
hsa-mir-17-3p
Nearest miRNA
hsa-let-7c/Upstream/1161149;
Nearest TSS
ENST00000624081/Upstream/3794; ENST00000491389/Downstream/3811;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/3327, chr21-CpG: 24/Downstream/9130
Upstream sequence
ttgttgaaatctctatatcttttctgattttttttgccatcttctatcagttactaaaaattctccactatgattgtagatatatctatttttccttttg
Downstream sequence
gttctatcactttttgctttgtatattttgagtccctgttattgggtgtatatatttagtataggttttgttttctagattaattgaccttattttttat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate