Basic Information
VIS ID
TVIS30008107
Fusion event
HIV-ATP6V1E1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
18093358/17610592 (Hg38)
End
18093358/17610592 (Hg38)
Orient
+
Location type
Intronic
Target gene
ATP6V1E1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-16-5p ; hsa-mir-423-5p ; hsa-mir-18a-3p ; hsa-mir-221-3p ; hsa-mir-1236-5p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-3125 ; hsa-mir-3184-5p ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-3910 ; hsa-mir-3916 ; hsa-mir-3942-5p ; hsa-mir-429 ; hsa-mir-4423-3p ; hsa-mir-449a ; hsa-mir-449b-5p ; hsa-mir-4688 ; hsa-mir-4703-5p ; hsa-mir-4708-3p ; hsa-mir-4709-3p ; hsa-mir-4765 ; hsa-mir-4797-5p ; hsa-mir-486-3p ; hsa-mir-542-3p ; hsa-mir-548v ; hsa-mir-6501-3p ; hsa-mir-6743-5p ; hsa-mir-6809-5p ; hsa-mir-6825-3p ; hsa-mir-6859-5p
Nearest miRNA
hsa-let-7a-3/Downstream/153588;
Nearest TSS
ENST00000624155/Upstream/15300; ENST00000464649/Downstream/8936;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/29181, chr22-CpG: 40/Downstream/17774
Upstream sequence
TAACCTTCAAAAAGGTGGCATAAAAAACAAACCAAATAAAAAACCTAATTATAAAGCCTATTAACTAGCTAAGACTATAATCTTTTGCTATAACCTTGTG
Downstream sequence
TGTTATAGCCCTTGCTACTTATATTTAGGAATGCTGCCAAGACATTAACATTACATGCCTCTAAACTTTTTTGAATTGTACAAATAATAATATCTATGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate