Basic Information
VIS ID
TVIS30008110
Fusion event
HIV-chr22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
19633891/19646368 (Hg38)
End
19633891/19646368 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3198-1/Upstream/1665407; hsa-let-7a-3/Downstream/317385;
Nearest TSS
ENST00000624155/Upstream/79529; ENST00000452326/Downstream/20655;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/79478, chr22-CpG: 16/Downstream/10145
Nearby gene
SEPTIN5(No orient, 68096)
Upstream sequence
gatcctcccaccttaacctcccaaaatgctgggactgcaggtgtgaaccaccacgacttgctaatttttaaatttattatagagatggggtctcactatg
Downstream sequence
ttgcccagactggtctagatctcctgacctccagcaatcctcctgcttcagcctcccaaaatgttgggattacaggtatgagccacggtgcctgttctgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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