Basic Information
VIS ID
TVIS30008121
Fusion event
HIV-SPECC1L-ADORA2A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
24723739/24327771 (Hg38)
End
24723739/24327771 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
SPECC1L-ADORA2A
Nearest miRNA
hsa-mir-1286/Upstream/1441392; hsa-let-7a-3/Downstream/1127875;
Nearest TSS
ENST00000624155/Upstream/23375; ENST00000472799/Downstream/84389;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/56264, chr22-CpG: 131/Downstream/95798
Upstream sequence
GTAACGATTTCAGCATTACTTTTTATTACTGCTACCATTAGCTGGCACATTTATAAATTTATTCCATTTTAAAGATACCATATTCCAACTACTGAGTCTG
Downstream sequence
TGAGGTCATCACATGGCTTCTTCTGCCTTTGAAGTGTTTTTAGTCTAGTGGTCGAGACAGATGTGTCGAGATGTGGTAATATTGGCGGCAACATGGTACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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